• Your initial consultation is free
  • All charges will be disclosed to investigators prior to initiation of work
  • Grant writing or editing requests will be subject to recharge
  • Please fill out a consultation request form and we will contact you to schedule a meeting


Effective July 1, 2020: our new hourly rate will be $180/hr to allow us to continue to serve the UCSD faculty at a heavily subsidized rate made possible by the VCHS and ACTRI. Existing project quotes will continue to be honored. Please contact Dr. Kathleen Fisch, Executive Director of CCBB if you have any questions.

  • UCSD Internal rate: $180/hour*
  • Non-profit rate: $261/hour*
  • For-profit rate: $362/hour*
  • *10 analysis hour minimum

Analytical Services

  • Please allow one business day for an initial response.
  • NGS analyses (typical cost: $3,600 for 20 samples):
    • Transcriptomics (RNA-Seq, miRNA-Seq, microarrays, single-cell RNA-Seq) Study design, alignment, gene-level or transcript level quantification, differentially expressed gene lists, gene set annotation, genome visualization, network analysis

    • Genomics (Exome / Whole Genome Sequencing, SNP arrays, GWAS) Study design, alignment, SNPs, indels, CNVs, structural variants, annotation, genome visualization, germline or somatic mutation calls, network analysis

    • Epigenomics (ChIP-Seq, ATAC-Seq, methylation arrays, Bisulfite-Seq) Study design, alignment, peak calling, visualization, comparative analysis, motif search, integration with RNA data (optional), differential methylation, network analysis
  • Other available analyses:
    • Metagenomics/microbiome (16S rRNA-Seq, shotgun sequencing) Study design, OTU picking, taxonomic abundance identification, alpha and beta diversity evaluation, network analysis
    • CRISPR screens (single, dual screens)
    • Network Analysis: Protein-protein interactions, network propagation, data integration, subnetwork identification
    • Custom Analytical Pipelines & Algorithm Development: Our team is experienced in developing novel algorithms, creating custom analytical pipelines, refactoring code and performing custom integrative analyses.

Additional Services

  • Custom analytical pipelines/algorithm development
  • Grant consultations
  • Personalized training & tutoring

CTRI Afflilates

UC San Diego Altman Clinical and Translational Research Institute (ACTRI) is pleased to announce the addition of a new Vouchers category to support Center for Computational Biology and Bioinformatics (CCBB) services. This new level of support for CCBB includes three funding tiers, ranging from $500 to $10,000.

Long-Term Consultations and Collaborations

  • Please call for more information
  • Please provide as much notice as possible if you require assistance writing a custom section for a grant proposal

See How CCBB Can Help With Your Bioinformatics Data

Request Free Consult 858-822-6258