Consultations

  • Your initial consultation is free
  • All charges will be disclosed to investigators prior to initiation of work
  • Grant writing or editing requests will be subject to recharge

 

Rates

  • UCSD Internal rate: $125/hour*
  • Non-profit rate: $181/hour*
  • For-profit rate: $362/hour*
  • *10 analysis hour minimum

 

Analytical Services

  • Analyses have an average turnaround time of 2-3 weeks, subject to size of study and queue availability.
  • Please allow one business day for an initial response.
  • NGS analyses (typical cost: $2,500 for 20 samples):
    • Transcriptomics (RNA-Seq, miRNA-Seq, microarrays, single-cell RNA-Seq) Study design, alignment, gene-level or transcript level quantification, differentially expressed gene lists, gene set annotation, genome visualization, network analysis
    • Genomics (Exome / Whole Genome Sequencing, SNP arrays, GWAS) Study design, alignment, SNPs, indels, CNVs, structural variants, annotation, genome visualization, germline or somatic mutation calls, network analysis
    • Epigenomics (ChIP-Seq, ATAC-Seq, methylation arrays, Bisulfite-Seq) Study design, alignment, peak calling, visualization, comparative analysis, motif search, integration with RNA data (optional), differential methylation, network analysis
  • Other available analyses:
    • Metagenomics/microbiome (16S rRNA-Seq, shotgun sequencing) Study design, OTU picking, taxonomic abundance identification, alpha and beta diversity evaluation, network analysis
    • CRISPR screens (single, dual screens)
    • Network Analysis: Protein-protein interactions, network propagation, data integration, subnetwork identification
    • Custom Analytical Pipelines & Algorithm Development: Our team is experienced in developing novel algorithms, creating custom analytical pipelines, refactoring code and performing custom integrative analyses.

 

Additional Services

  • Custom analytical pipelines/algorithm development
  • Grant consultations
  • Personalized training & tutoring

 

CTRI Afflilates

UC San Diego Altman Clinical and Translational Research Institute (ACTRI) is pleased to announce the addition of a new Vouchers category to support Center for Computational Biology and Bioinformatics (CCBB) services. This new level of support for CCBB includes three funding tiers, ranging from $500 to $10,000. More information and eligibility requirements are here.

 

Long-Term Consultations and Collaborations

  • Please call for more information
  • Please provide as much notice as possible if you require assistance writing a custom section for a grant proposal

See How CCBB Can Help With Your Bioinformatics Data

Request Free Consult 858-822-6258